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Just an update, I was able to get Project64 to show up on the Robot, but currently the Bridge is having problems capturing the output from it, only getting around 1 in 10 frames or so, the rest being black.

Currently R2 is set up to disregard black frames when updating the monitor, unless more then 5 consecutive black frames are captured (because sometimes there really should be a black screen), when I turn this feature off on my end I can see the output from Project64 without flickering, but it obviously looks like a slideshow, on your end you'll just see it very flickery, but if we can find the correct settings, then both my end and yours should show smooth content.

I'm trying to play around with Project64 video plug-ins and their settings to see which gives better results, you can investigate it on your end as well.

Here's what I did to make it work:

Set: emulator.N64.window_title: Project64 (instead of Project64 2.1.0.1) - the space in the title made it look like two parameters for the Bridge
Set: emulator.N64.exec: "C:\Program Files (x86)\Project64 2.1\Project64.exe %FILENAME%" (with quotes, seems like this isn't an issue for Project64)